Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ncdnNeurochondrin. (817 aa)    
Predicted Functional Partners:
aar2
AAR2 splicing factor.
    
 
 0.912
ENSACLP00000018683
Tetratricopeptide repeat domain 27.
    
 
 0.909
eftud2
Elongation factor Tu GTP binding domain containing 2.
    
 
 0.898
LOC113030687
Glutamate receptor, metabotropic 5a.
   
 0.880
LOC113011728
Glutamate receptor, metabotropic 1b.
   
 0.880
grm1
Glutamate receptor, metabotropic 1a.
   
 0.880
grm5
Glutamate receptor, metabotropic 5b.
   
 0.880
c12h9orf78
Zgc:103692.
    
   0.862
eapp
E2f-associated phosphoprotein.
    
 
 0.852
ENSACLP00000031952
Ecdysoneless homolog (Drosophila).
    
   0.846
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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