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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tfap2eTranscription factor AP-2 epsilon. (429 aa)    
Predicted Functional Partners:
ENSACLP00000039045
WW domain containing oxidoreductase.
    
 0.734
LOC113006831
BTB domain-containing protein.
    
 0.702
KCTD15
Potassium channel tetramerization domain containing 15.
    
 0.702
KCTD15-2
Potassium channel tetramerization domain containing 15a.
    
 0.702
KCTD1
Potassium channel tetramerization domain containing 1.
    
 0.702
yeats4
YEATS domain containing 4.
    
 0.702
LOC113032460
DEK proto-oncogene.
    
 0.688
ENSACLP00000012279
Nucleophosmin 1a.
   
  0.655
ENSACLP00000020322
Nucleophosmin 1b.
   
  0.655
ENSACLP00000010626
Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4a.
    
 0.640
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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