Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tmem9Transmembrane protein 9. (189 aa)    
Predicted Functional Partners:
ENSACLP00000012317
Chloride channel protein.
    
 
 0.745
clcn3
Chloride channel protein.
    
 
 0.745
wwc3
WWC family member 3.
    
 
 0.745
clcn5
Chloride channel protein.
    
 
 0.745
wwc1
WW and C2 domain containing 1.
    
 
 0.745
tmem53
Transmembrane protein 53.
      
 0.655
tmem214
Transmembrane protein 214.
      
 0.608
tm9sf2
Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.
      
 0.605
rbm42
RNA binding motif protein 42.
      
 0.605
heatr3
HEAT repeat containing 3.
    
   0.564
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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