Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
prpf4bPre-mRNA processing factor 4Bb. (1019 aa)    
Predicted Functional Partners:
pnn
Pinin, desmosome associated protein.
   
 0.995
prpf6
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).
    
 
 0.982
sf3b1
Splicing factor 3b, subunit 1.
   
 
 0.961
LOC113037567
RNA binding motif protein 25b.
   
  0.956
ENSACLP00000040817
RNA binding motif protein 25a.
   
  0.956
ENSACLP00000025413
Zinc finger CCCH-type containing 18.
   
   0.954
prpf8
Pre-mRNA processing factor 8.
    
 
 0.951
prpf31
PRP31 pre-mRNA processing factor 31 homolog (yeast).
    
 
 0.946
prpf4
PRP4 pre-mRNA processing factor 4 homolog (yeast).
    
 
 0.925
TCERG1
Transcription elongation regulator 1.
   
 0.922
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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