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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prpf4bPre-mRNA processing factor 4Bb. (1019 aa)    
Predicted Functional Partners:
sf3b1
Splicing factor 3b, subunit 1.
   
 
 0.963
prpf6
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).
    
 
 0.963
pnn
Pinin, desmosome associated protein.
   
 0.952
eftud2
Elongation factor Tu GTP binding domain containing 2.
    
 
 0.947
prpf8
Pre-mRNA processing factor 8.
    
 
 0.942
prpf31
PRP31 pre-mRNA processing factor 31 homolog (yeast).
    
 
 0.931
TCERG1
Transcription elongation regulator 1.
   
 0.926
prpf4
PRP4 pre-mRNA processing factor 4 homolog (yeast).
    
 
 0.919
snrnp200
Small nuclear ribonucleoprotein 200 (U5).
    
 
 0.917
LOC113037567
RNA binding motif protein 25b.
   
  0.904
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.