STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC113033479Transcriptional and immune response regulator a. (100 aa)    
Predicted Functional Partners:
GPR119
G protein-coupled receptor 119; Belongs to the G-protein coupled receptor 1 family.
      
 0.715
ENSACLP00000016721
BCL2 associated athanogene 4.
      
 0.655
lsm1
U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.
      
 0.642
LOC113031178
Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.
      
 0.620
sord
Sorbitol dehydrogenase.
      
 0.608
ccnb3
Cyclin B3; Belongs to the cyclin family.
      
 0.604
ENSACLP00000021511
PRP40 pre-mRNA processing factor 40 homolog A.
      
 0.567
ENSACLP00000035381
Claudin 23a.
  
   
 0.552
ENSACLP00000006049
Uncharacterized protein.
      
 0.524
smg7
SMG7 nonsense mediated mRNA decay factor.
      
 0.524
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.