STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sys1Protein SYS1 homolog; Involved in protein trafficking. Belongs to the SYS1 family. (156 aa)    
Predicted Functional Partners:
arfrp1
ADP-ribosylation factor related protein 1.
   
 
 0.852
ENSACLP00000016256
VPS52 subunit of GARP complex.
     
 0.764
RIC1
RIC1 homolog, RAB6A GEF complex partner 1.
     
 0.758
ENSACLP00000010243
Component of oligomeric golgi complex 3.
     
 0.695
LOC113031945
Uncharacterized protein.
   
 
 0.690
cog1
Component of oligomeric golgi complex 1.
   
 
 0.683
cog6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
     
 0.676
gcc1
GRIP and coiled-coil domain containing 1.
     
 0.668
cog7
Component of oligomeric golgi complex 7.
     
 0.668
stx16
Syntaxin 16; Belongs to the syntaxin family.
     
 0.660
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.