Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ENSACLP00000007495Transmembrane 6 superfamily member 2. (378 aa)    
Predicted Functional Partners:
ENSACLP00000005838
RNA binding motif protein 17.
    
 
 0.863
LOC113020252
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
    
 0.819
u2af2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
    
 0.819
mre11
Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.
     
  0.800
mboat7
Membrane bound O-acyltransferase domain containing 7; Belongs to the membrane-bound acyltransferase family.
      
 0.724
LOC113018639
DEAH (Asp-Glu-Ala-His) box helicase 15.
    
 0.688
dhx32
DEAH (Asp-Glu-Ala-His) box polypeptide 32a.
    
 0.688
dqx1
DEAQ box RNA-dependent ATPase 1.
    
 0.688
LOC113035492
DEAH (Asp-Glu-Ala-His) box polypeptide 32b.
    
 0.688
DHX15
DEAH-box helicase 15.
    
 0.688
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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