STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000007495Transmembrane 6 superfamily member 2. (378 aa)    
Predicted Functional Partners:
ENSACLP00000005838
RNA binding motif protein 17.
   
 
 0.864
LOC113020252
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
    
 
 0.762
u2af2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
    
 
 0.762
dhx9
DEAH (Asp-Glu-Ala-His) box helicase 9.
    
 0.748
dhx32
DEAH (Asp-Glu-Ala-His) box polypeptide 32a.
   
 0.743
dqx1
DEAQ box RNA-dependent ATPase 1.
   
 0.743
LOC113035492
DEAH (Asp-Glu-Ala-His) box polypeptide 32b.
   
 0.743
LOC113018639
DEAH (Asp-Glu-Ala-His) box helicase 15.
   
 0.736
DHX15
DEAH-box helicase 15.
   
 0.736
ENSACLP00000011218
Splicing factor 1.
   
 0.692
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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