STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zpld1Zona pellucida-like domain containing 1a. (418 aa)    
Predicted Functional Partners:
bricd5
BRICHOS domain containing 5.
      
 0.693
ENSACLP00000029286
Cerebellin 12.
      
 0.663
LOC113012283
Otolith matrix protein.
      
 0.606
LOC113018664
EF-hand domain-containing protein.
    
 
 0.546
ENSACLP00000017774
N-acetylglucosamine-1-phosphate transferase subunit gamma.
    
 
 0.546
prkcsh
Protein kinase C substrate 80K-H.
    
 
 0.546
ENSACLP00000020084
Lipoxygenase homology domains 1b.
    
 
 0.521
ENSACLP00000041505
Lipoxygenase homology domains 1a.
    
 
 0.521
skor2
SKI family transcriptional corepressor 2.
      
 0.506
PCDH20
Protocadherin 20.
      
 0.465
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
Server load: medium (58%) [HD]