Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
rab34RAB34, member RAS oncogene family a. (267 aa)    
Predicted Functional Partners:
vps53
VPS53 subunit of GARP complex.
    
 0.912
RIC1
RIC1 homolog, RAB6A GEF complex partner 1.
   
 0.902
cog6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
   
 0.891
rabggta
Rab geranylgeranyltransferase subunit alpha.
    
 0.875
ENSACLP00000016256
VPS52 subunit of GARP complex.
    
 0.873
rgp1
GP1 homolog, RAB6A GEF complex partner 1.
    
 0.853
ENSACLP00000036802
Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.
    
 0.828
ENSACLP00000036839
Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.
    
 0.828
LOC113008660
Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.
   
 0.795
LOC113012979
Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.
   
 0.795
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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