Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cdca5Uncharacterized protein. (261 aa)    
Predicted Functional Partners:
smc3
Structural maintenance of chromosomes protein.
   
 0.980
LOC113027962
WAPL cohesin release factor b.
    
 0.955
wapl
WAPL cohesin release factor a.
    
 0.955
pds5a
PDS5 cohesin associated factor A.
    
 0.939
pds5b
PDS5 cohesin associated factor B.
    
 0.925
smc1a
Structural maintenance of chromosomes protein.
   
 0.916
LOC113026355
Structural maintenance of chromosomes protein.
   
 0.916
LOC113029849
REC8 meiotic recombination protein b.
    
 0.911
rad21
RAD21 cohesin complex component a.
    
 0.902
cdc45
CDC45 cell division cycle 45 homolog (S. cerevisiae).
   
  
 0.887
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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