neurod4 protein (Astatotilapia calliptera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

neurod4

Neuronal differentiation 4. (352 aa)

Predicted Functional Partners:

TCF4

0.624

LOC113010171

0.624

tcf12

0.624

LOC113016192

0.624

ENSACLP00000002386

0.603

LOC113021647

0.603

LOC113026641

0.592

ENSACLP00000024384

0.584

ENSACLP00000017965

0.579

hes1

0.576

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000002386	neurod4	ENSACLP00000002386	ENSACLP00000007577	Vomeronasal type-1 receptor.	Neuronal differentiation 4.	0.603
ENSACLP00000017965	ENSACLP00000024384	ENSACLP00000017965	ENSACLP00000024384	Hairy-related 8.2.	Achaete-scute family bHLH transcription factor 1a.	0.752
ENSACLP00000017965	neurod4	ENSACLP00000017965	ENSACLP00000007577	Hairy-related 8.2.	Neuronal differentiation 4.	0.579
ENSACLP00000024384	ENSACLP00000017965	ENSACLP00000024384	ENSACLP00000017965	Achaete-scute family bHLH transcription factor 1a.	Hairy-related 8.2.	0.752
ENSACLP00000024384	LOC113010171	ENSACLP00000024384	ENSACLP00000003928	Achaete-scute family bHLH transcription factor 1a.	Transcription factor 3a.	0.859
ENSACLP00000024384	LOC113016192	ENSACLP00000024384	ENSACLP00000034425	Achaete-scute family bHLH transcription factor 1a.	Transcription factor 3b.	0.859
ENSACLP00000024384	LOC113026641	ENSACLP00000024384	ENSACLP00000012231	Achaete-scute family bHLH transcription factor 1a.	BHLH domain-containing protein.	0.848
ENSACLP00000024384	TCF4	ENSACLP00000024384	ENSACLP00000002243	Achaete-scute family bHLH transcription factor 1a.	Transcription factor 4.	0.859
ENSACLP00000024384	hes1	ENSACLP00000024384	ENSACLP00000039706	Achaete-scute family bHLH transcription factor 1a.	Hairy-related 6.	0.752
ENSACLP00000024384	neurod4	ENSACLP00000024384	ENSACLP00000007577	Achaete-scute family bHLH transcription factor 1a.	Neuronal differentiation 4.	0.584
ENSACLP00000024384	tcf12	ENSACLP00000024384	ENSACLP00000005006	Achaete-scute family bHLH transcription factor 1a.	Transcription factor 12.	0.859
LOC113010171	ENSACLP00000024384	ENSACLP00000003928	ENSACLP00000024384	Transcription factor 3a.	Achaete-scute family bHLH transcription factor 1a.	0.859
LOC113010171	neurod4	ENSACLP00000003928	ENSACLP00000007577	Transcription factor 3a.	Neuronal differentiation 4.	0.624
LOC113016192	ENSACLP00000024384	ENSACLP00000034425	ENSACLP00000024384	Transcription factor 3b.	Achaete-scute family bHLH transcription factor 1a.	0.859
LOC113016192	neurod4	ENSACLP00000034425	ENSACLP00000007577	Transcription factor 3b.	Neuronal differentiation 4.	0.624
LOC113021647	neurod4	ENSACLP00000002431	ENSACLP00000007577	Vomeronasal type-1 receptor.	Neuronal differentiation 4.	0.603
LOC113026641	ENSACLP00000024384	ENSACLP00000012231	ENSACLP00000024384	BHLH domain-containing protein.	Achaete-scute family bHLH transcription factor 1a.	0.848
LOC113026641	neurod4	ENSACLP00000012231	ENSACLP00000007577	BHLH domain-containing protein.	Neuronal differentiation 4.	0.592
TCF4	ENSACLP00000024384	ENSACLP00000002243	ENSACLP00000024384	Transcription factor 4.	Achaete-scute family bHLH transcription factor 1a.	0.859
TCF4	neurod4	ENSACLP00000002243	ENSACLP00000007577	Transcription factor 4.	Neuronal differentiation 4.	0.624