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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pald1Phosphatase domain containing paladin 1a. (895 aa)    
Predicted Functional Partners:
chst2
Sulfotransferase; Belongs to the sulfotransferase 1 family.
      
 0.651
tcp11
Uncharacterized protein.
      
 0.632
depdc4
Si:ch211-265o23.1.
      
 0.632
ENSACLP00000008180
Poly [ADP-ribose] polymerase.
      
 0.536
polr2f
Polymerase (RNA) II (DNA directed) polypeptide F.
      
 0.508
LOC113028054
Syntaxin 4; Belongs to the syntaxin family.
      
 0.508
adamts14
ADAM metallopeptidase with thrombospondin type 1 motif, 14.
      
 0.491
LOC113028513
Zinc finger protein 646.
      
 0.480
LOC113025914
Carbohydrate sulfotransferase.
      
 0.463
LOC113024999
Carbohydrate sulfotransferase.
      
 0.463
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.