STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113026114Carn_acyltransf domain-containing protein; Belongs to the carnitine/choline acetyltransferase family. (647 aa)    
Predicted Functional Partners:
ENSACLP00000009054
Ribonuclease P/MRP 14 subunit.
   
 0.847
LOC113014528
Carnitine O-acetyltransferase b.
  
  
 
0.802
scp2
Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.
   
 0.802
LOC113016539
Sterol carrier protein 2b.
   
 0.802
crat
Zgc:154046; Belongs to the carnitine/choline acetyltransferase family.
  
  
 
0.800
hsdl2
Hydroxysteroid dehydrogenase like 2.
   
 0.769
LOC113030206
Malate synthase-like.
   
  
 0.745
cpt2
Carnitine palmitoyltransferase 2; Belongs to the carnitine/choline acetyltransferase family.
  
0.744
acox1
Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.
   
 0.737
pex14
Peroxisomal biogenesis factor 14.
    
 0.691
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.