Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000007613Matrin-type domain-containing protein. (1662 aa)    
Predicted Functional Partners:
ENSACLP00000020708
Nipped-B protein.
   
  0.769
ENSACLP00000028272
Nipped-B protein.
   
  0.769
sf3b1
Splicing factor 3b, subunit 1.
   
   0.742
SENP6
SUMO specific peptidase 6.
   
   0.737
LOC113031008
Zgc:163098.
   
    0.680
ENSACLP00000040888
U2 snRNP-associated SURP domain containing.
   
    0.680
ENSACLP00000020732
Uncharacterized protein.
   
  0.669
ZFC3H1
Zinc finger C3H1-type containing.
   
   0.640
LOC113025474
Uncharacterized protein.
  
  0.602
ENSACLP00000034796
Translocase of outer mitochondrial membrane 20.
   
 0.590
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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