STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COA4Cytochrome c oxidase assembly factor 4 homolog. (86 aa)    
Predicted Functional Partners:
cmc2
COX assembly mitochondrial protein.
   
 
 0.684
LOC113007747
Cytochrome c oxidase copper chaperone COX17.
    
 0.677
msh6
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).
    
 
 0.623
ssbp1
Single-stranded DNA binding protein 1.
    
 
 0.618
LOC113008712
Cytochrome c oxidase assembly factor 6.
   
 
 0.602
sdhaf4
Succinate dehydrogenase complex assembly factor 4.
      
 0.577
lyrm7
LYR motif containing 7; Belongs to the complex I LYR family.
      
 0.577
LOC113027660
Cytochrome c oxidase assembly factor COX19.
     
 0.571
mrpl17
Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
   
  
 0.558
chchd4
Coiled-coil-helix-coiled-coil-helix domain containing 4a.
   
 
 0.533
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.