Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC113031064Reticulon 4 receptor-like 1a. (455 aa)    
Predicted Functional Partners:
stk10
Serine/threonine kinase 10.
      
 0.719
mthfs
5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
      
 0.717
ENSACLP00000005433
SH3-domain binding protein 5b (BTK-associated).
      
 0.716
LOC113022754
Tankyrase_bdg_C domain-containing protein.
    
  0.714
smyd4
SET and MYND domain containing 4.
    
 
 0.657
tsr3
Probable ribosome biogenesis protein; Probable pre-rRNA processing protein involved in ribosome biogenesis.
      
 0.636
LOC113012483
Coiled-coil domain containing 28B.
      
 0.580
LOC113010089
Vav 3 guanine nucleotide exchange factor b.
    
 0.576
ntng1
Netrin g1a.
    
 0.576
eef1g
Eukaryotic translation elongation factor 1 gamma.
    
 0.548
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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