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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113013757Core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1a. (403 aa)    
Predicted Functional Partners:
nelfb
Negative elongation factor complex member B.
   
 0.962
nelfcd
Negative elongation factor complex member C/D.
    
 0.959
nelfe
Negative elongation factor complex member E.
   
 0.957
polr2h
Info polymerase (RNA) II (DNA directed) polypeptide H.
    
  0.928
ENSACLP00000016700
Transcription elongation factor SPT5.
   
 0.926
gcnt4
Si:dkeyp-87d8.8.
   
 0.919
c1galt1c1
C1GALT1-specific chaperone 1.
    
0.915
galnt2
Polypeptide N-acetylgalactosaminyltransferase.
     
 0.907
polr2b
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.904
polr2c
Polymerase (RNA) II (DNA directed) polypeptide C.
    
  0.899
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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