Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SRRM3Serine/arginine repetitive matrix 3. (639 aa)    
Predicted Functional Partners:
ENSACLP00000029196
PWI domain-containing protein.
   
 0.965
ENSACLP00000037635
CWC22 spliceosome associated protein homolog.
    
 0.955
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
    
 0.951
ENSACLP00000002723
DEAH (Asp-Glu-Ala-His) box polypeptide 38.
    
 0.947
syf2
SYF2 pre-mRNA-splicing factor.
    
 0.947
cwc25
CWC25 spliceosome associated protein homolog.
   
 0.941
ENSACLP00000010721
SLU7 homolog, splicing factor.
    
 0.939
yju2
YJU2 splicing factor homolog.
   
 0.933
ENSACLP00000023721
Small nuclear ribonucleoprotein polypeptide F.
    
 0.930
ENSACLP00000036553
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
    
 0.919
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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