STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113026121LIM domain only 4a. (193 aa)    
Predicted Functional Partners:
LOC113034698
LIM domain binding 1a.
   
 0.644
ldb2
LIM domain binding 2a.
   
 0.644
LOC113023769
LIM-domain binding 1b.
   
 0.644
idi1
Isopentenyl-diphosphate delta isomerase 1.
    
   0.618
LOC113023510
MADS-box domain-containing protein.
    
 0.596
SRF
Serum response factor.
    
 0.596
tpk1
Thiamin pyrophosphokinase 1.
    
  0.503
rbbp8
Uncharacterized protein.
    
 
 0.496
LHX3
LIM homeobox 3.
    
0.438
lhx4
LIM homeobox 4.
    
0.438
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.