STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000007805Matrix metallopeptidase 17b. (589 aa)    
Predicted Functional Partners:
LOC113020696
TIMP metallopeptidase inhibitor 2b.
    
 0.798
TIMP2
TIMP metallopeptidase inhibitor 2.
    
 0.798
TIMP3
TIMP metallopeptidase inhibitor 3.
    
 0.773
timp4
TIMP metallopeptidase inhibitor 4, tandem duplicate 2.
    
 0.641
LOC113034822
Heparin-binding EGF-like growth factor a.
    
 0.590
LOC113036136
Matrix metallopeptidase 20a (enamelysin).
  
 
0.555
ENSACLP00000001013
Matrix metallopeptidase 1.
  
 
0.535
ENSACLP00000001307
Matrix metallopeptidase 1.
  
 
0.534
ENSACLP00000014900
VWFA domain-containing protein.
    
  0.526
edn1
Endothelin 1.
     
 0.518
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.