LOC113010886 protein (Astatotilapia calliptera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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Co-expression

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[Homology]

Score

LOC113010886

Uncharacterized protein. (993 aa)

Predicted Functional Partners:

ENSACLP00000012866

0.958

ENSACLP00000012873

0.958

ENSACLP00000014175

0.958

epn2

0.939

LOC113023838

0.939

LOC113032146

0.939

ENSACLP00000034114

0.939

ENSACLP00000012953

0.927

ENSACLP00000000836

0.921

ENSACLP00000001080

0.921

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000000836	ENSACLP00000001080	ENSACLP00000000836	ENSACLP00000001080	Intersectin 1 (SH3 domain protein).	Uncharacterized protein.	0.941
ENSACLP00000000836	ENSACLP00000012866	ENSACLP00000000836	ENSACLP00000012866	Intersectin 1 (SH3 domain protein).	Uncharacterized protein.	0.878
ENSACLP00000000836	ENSACLP00000012873	ENSACLP00000000836	ENSACLP00000012873	Intersectin 1 (SH3 domain protein).	SH3 domain-containing protein.	0.727
ENSACLP00000000836	ENSACLP00000012953	ENSACLP00000000836	ENSACLP00000012953	Intersectin 1 (SH3 domain protein).	EH domain-containing protein.	0.484
ENSACLP00000000836	ENSACLP00000014175	ENSACLP00000000836	ENSACLP00000014175	Intersectin 1 (SH3 domain protein).	Intersectin 2b.	0.727
ENSACLP00000000836	ENSACLP00000034114	ENSACLP00000000836	ENSACLP00000034114	Intersectin 1 (SH3 domain protein).	Epsin 3a.	0.803
ENSACLP00000000836	LOC113010886	ENSACLP00000000836	ENSACLP00000007817	Intersectin 1 (SH3 domain protein).	Uncharacterized protein.	0.921
ENSACLP00000000836	LOC113023838	ENSACLP00000000836	ENSACLP00000032285	Intersectin 1 (SH3 domain protein).	Epsin 3b.	0.803
ENSACLP00000000836	LOC113032146	ENSACLP00000000836	ENSACLP00000033201	Intersectin 1 (SH3 domain protein).	Epsin 1.	0.811
ENSACLP00000000836	epn2	ENSACLP00000000836	ENSACLP00000013355	Intersectin 1 (SH3 domain protein).	Epsin 2.	0.811
ENSACLP00000001080	ENSACLP00000000836	ENSACLP00000001080	ENSACLP00000000836	Uncharacterized protein.	Intersectin 1 (SH3 domain protein).	0.941
ENSACLP00000001080	ENSACLP00000012866	ENSACLP00000001080	ENSACLP00000012866	Uncharacterized protein.	Uncharacterized protein.	0.727
ENSACLP00000001080	ENSACLP00000012873	ENSACLP00000001080	ENSACLP00000012873	Uncharacterized protein.	SH3 domain-containing protein.	0.727
ENSACLP00000001080	ENSACLP00000012953	ENSACLP00000001080	ENSACLP00000012953	Uncharacterized protein.	EH domain-containing protein.	0.484
ENSACLP00000001080	ENSACLP00000014175	ENSACLP00000001080	ENSACLP00000014175	Uncharacterized protein.	Intersectin 2b.	0.727
ENSACLP00000001080	ENSACLP00000034114	ENSACLP00000001080	ENSACLP00000034114	Uncharacterized protein.	Epsin 3a.	0.803
ENSACLP00000001080	LOC113010886	ENSACLP00000001080	ENSACLP00000007817	Uncharacterized protein.	Uncharacterized protein.	0.921
ENSACLP00000001080	LOC113023838	ENSACLP00000001080	ENSACLP00000032285	Uncharacterized protein.	Epsin 3b.	0.803
ENSACLP00000001080	LOC113032146	ENSACLP00000001080	ENSACLP00000033201	Uncharacterized protein.	Epsin 1.	0.811
ENSACLP00000001080	epn2	ENSACLP00000001080	ENSACLP00000013355	Uncharacterized protein.	Epsin 2.	0.811