STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113036168ArfGAP with FG repeats 1a. (634 aa)    
Predicted Functional Partners:
ENSACLP00000034552
Epidermal growth factor receptor pathway substrate 15.
    
 0.872
vamp7
Synaptobrevin-like 1; Belongs to the synaptobrevin family.
    
 0.858
ENSACLP00000015691
Epidermal growth factor receptor pathway substrate 15 like 1.
    
 0.844
eps15l1
Epidermal growth factor receptor pathway substrate 15-like 1a.
    
 0.844
fcho2
FCH domain only 2.
    
 0.806
ENSACLP00000015733
FCH domain only 1.
    
 0.744
ENSACLP00000000836
Intersectin 1 (SH3 domain protein).
    
 0.689
ENSACLP00000001080
Uncharacterized protein.
    
 0.689
ENSACLP00000012866
Uncharacterized protein.
    
 0.688
ENSACLP00000012873
SH3 domain-containing protein.
    
 0.688
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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