Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
trim71Tripartite motif containing 71, E3 ubiquitin protein ligase. (835 aa)    
Predicted Functional Partners:
rnf181
RING-type domain-containing protein.
      
 0.716
LIN28A
Lin-28 homolog A.
   
 
 0.713
ENSACLP00000026842
Centromere protein J.
    
 0.706
gbe1
Glucan (1,4-alpha-), branching enzyme 1b.
      
 0.695
lin28b
Lin-28 homolog B (C. elegans).
   
 
 0.685
ENSACLP00000015120
Bicaudal C homolog 2.
      
 0.670
bicc1
BicC family RNA binding protein 1a.
      
 0.670
ENSACLP00000006680
Poly-U binding splicing factor b.
      
 0.663
ENSACLP00000018777
Cytoplasmic polyadenylation element binding protein 1b.
    
 
 0.663
ENSACLP00000024094
RRM domain-containing protein.
      
 0.663
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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