Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tbx20T-box transcription factor 20. (437 aa)    
Predicted Functional Partners:
nkx2-5
NK2 homeobox 5.
   
 0.975
ENSACLP00000011510
Solute carrier family 25 member 21; Belongs to the mitochondrial carrier (TC 2.A.29) family.
    
   0.974
phf13
PHD finger protein 13.
    
   0.974
ENSACLP00000036053
Biliverdin reductase A.
    
   0.948
gsc
Goosecoid.
    
  0.909
gata4
GATA binding protein 4.
   
 0.908
gata6
GATA binding protein 6.
   
 0.868
gata5
GATA binding protein 5.
   
 0.852
ISL2
ISL LIM homeobox 2b.
   
 0.805
LOC113033175
ISL LIM homeobox 1.
   
 0.805
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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