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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tbx20T-box transcription factor 20. (437 aa)    
Predicted Functional Partners:
gsc
Goosecoid.
    
 
 0.917
phf13
PHD finger protein 13.
    
   0.782
ENSACLP00000011510
Solute carrier family 25 member 21; Belongs to the mitochondrial carrier (TC 2.A.29) family.
    
   0.773
nkx2-5
NK2 homeobox 5.
   
 
 0.721
LOC113016048
TLE family member 2, transcriptional corepressor a.
    
 
 0.670
LOC113017016
TLE family member 2, transcriptional corepressor b.
    
 
 0.670
ENSACLP00000001347
TLE family member 5, transcriptional modulator.
    
 
 0.670
LOC113012333
TLE family member 5, transcriptional modulator.
    
 
 0.670
ENSACLP00000021729
TLE family member 3, transcriptional corepressor.
    
 
 0.670
TLE3
TLE family member 3, transcriptional corepressor.
    
 
 0.670
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.