STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdzd8PDZ domain containing 8. (1206 aa)    
Predicted Functional Partners:
prkacb
Uncharacterized protein; Belongs to the protein kinase superfamily.
    
  0.804
LOC113011333
Uncharacterized protein; Belongs to the protein kinase superfamily.
    
  0.804
LOC113020616
Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate a; Belongs to the protein kinase superfamily.
    
  0.804
ENSACLP00000035547
Protein kinase, cAMP-dependent, catalytic, alpha, genome duplicate b.
    
  0.804
LOC113022863
RAB7a, member RAS oncogene family.
    
 
 0.788
LOC113022527
Uncharacterized protein.
    
 
 0.788
LOC113022528
RAB7A, member RAS oncogene family.
    
 
 0.788
ENSACLP00000013252
Protein kinase X-linked; Belongs to the protein kinase superfamily.
    
  0.663
ENSACLP00000022045
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
    
  0.663
THAP1
THAP domain containing 1.
    
  0.566
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.