trmu protein (Astatotilapia calliptera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

trmu

tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase. (416 aa)

Predicted Functional Partners:

gtpbp3

0.948

mto1

0.914

rfk

0.853

ergic1

0.847

ergic3

0.847

ENSACLP00000029055

0.847

ENSACLP00000029137

0.847

ENSACLP00000029167

0.847

ERGIC2

0.847

asl

0.836

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000029055	ergic3	ENSACLP00000029055	ENSACLP00000011990	Si:ch211-225b10.3.	ERGIC and golgi 3.	0.910
ENSACLP00000029055	gtpbp3	ENSACLP00000029055	ENSACLP00000017735	Si:ch211-225b10.3.	GTP binding protein 3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	0.978
ENSACLP00000029055	trmu	ENSACLP00000029055	ENSACLP00000007947	Si:ch211-225b10.3.	tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase.	0.847
ENSACLP00000029137	ergic3	ENSACLP00000029137	ENSACLP00000011990	COPIIcoated_ERV domain-containing protein.	ERGIC and golgi 3.	0.910
ENSACLP00000029137	gtpbp3	ENSACLP00000029137	ENSACLP00000017735	COPIIcoated_ERV domain-containing protein.	GTP binding protein 3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	0.978
ENSACLP00000029137	trmu	ENSACLP00000029137	ENSACLP00000007947	COPIIcoated_ERV domain-containing protein.	tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase.	0.847
ENSACLP00000029167	ergic3	ENSACLP00000029167	ENSACLP00000011990	Uncharacterized protein.	ERGIC and golgi 3.	0.910
ENSACLP00000029167	gtpbp3	ENSACLP00000029167	ENSACLP00000017735	Uncharacterized protein.	GTP binding protein 3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	0.978
ENSACLP00000029167	trmu	ENSACLP00000029167	ENSACLP00000007947	Uncharacterized protein.	tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase.	0.847
ERGIC2	ergic3	ENSACLP00000039899	ENSACLP00000011990	ERGIC and golgi 2.	ERGIC and golgi 3.	0.911
ERGIC2	gtpbp3	ENSACLP00000039899	ENSACLP00000017735	ERGIC and golgi 2.	GTP binding protein 3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	0.978
ERGIC2	trmu	ENSACLP00000039899	ENSACLP00000007947	ERGIC and golgi 2.	tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase.	0.847
asl	trmu	ENSACLP00000010971	ENSACLP00000007947	Argininosuccinate lyase.	tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase.	0.836
ergic1	ergic3	ENSACLP00000006260	ENSACLP00000011990	Endoplasmic reticulum-golgi intermediate compartment 1.	ERGIC and golgi 3.	0.488
ergic1	gtpbp3	ENSACLP00000006260	ENSACLP00000017735	Endoplasmic reticulum-golgi intermediate compartment 1.	GTP binding protein 3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.	0.978
ergic1	trmu	ENSACLP00000006260	ENSACLP00000007947	Endoplasmic reticulum-golgi intermediate compartment 1.	tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase.	0.847
ergic3	ENSACLP00000029055	ENSACLP00000011990	ENSACLP00000029055	ERGIC and golgi 3.	Si:ch211-225b10.3.	0.910
ergic3	ENSACLP00000029137	ENSACLP00000011990	ENSACLP00000029137	ERGIC and golgi 3.	COPIIcoated_ERV domain-containing protein.	0.910
ergic3	ENSACLP00000029167	ENSACLP00000011990	ENSACLP00000029167	ERGIC and golgi 3.	Uncharacterized protein.	0.910
ergic3	ERGIC2	ENSACLP00000011990	ENSACLP00000039899	ERGIC and golgi 3.	ERGIC and golgi 2.	0.911