Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
trmutRNA 5-methylaminomethyl-2-thiouridylate methyltransferase. (416 aa)    
Predicted Functional Partners:
gtpbp3
GTP binding protein 3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
  
 0.938
mto1
Mitochondrial tRNA translation optimization 1.
  
 0.931
rfk
Riboflavin kinase.
  
 
 0.851
trmt12
tRNA methyltransferase 12 homolog.
   
  
 0.807
ndufa1
NADH:ubiquinone oxidoreductase subunit A1.
      
 0.801
trit1
tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37; Belongs to the IPP transferase family.
  
  
 0.782
ergic1
Endoplasmic reticulum-golgi intermediate compartment 1.
  
 0.780
ergic3
ERGIC and golgi 3.
  
 0.780
ENSACLP00000029055
Si:ch211-225b10.3.
  
 0.780
ENSACLP00000029137
COPIIcoated_ERV domain-containing protein.
  
 0.780
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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