STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113031698HERPUD family member 2. (412 aa)    
Predicted Functional Partners:
atf4
Activating transcription factor 4a.
   
 
 0.576
ENSACLP00000032458
Synovial apoptosis inhibitor 1, synoviolin.
   
 
 0.571
amfr
Autocrine motility factor receptor b.
   
 
 0.565
LOC113021099
Activating transcription factor 4b.
   
 
 0.468
sel1l
SEL1L adaptor subunit of ERAD E3 ubiquitin ligase.
    
 
 0.441
LOC113011770
Zmp:0000000662.
    
 
 0.406
rnf145
Ring finger protein 145b.
    
 
 0.406
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.