LOC113031699 protein (Astatotilapia calliptera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC113031699

Protein kinase-like domain containing. (320 aa)

Predicted Functional Partners:

ENSACLP00000003009

0.513

LOC113024447

0.513

LOC113024448

0.513

LOC113027103

0.513

ENSACLP00000008552

0.513

LOC113027105

0.513

ENSACLP00000014404

0.513

runx1t1

0.513

cbfa2t2

0.513

ENSACLP00000035642

0.513

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000003009	LOC113031699	ENSACLP00000003009	ENSACLP00000007986	Cytochrome P450, family 3, subfamily A, polypeptide 65; Belongs to the cytochrome P450 family.	Protein kinase-like domain containing.	0.513
ENSACLP00000008552	LOC113031699	ENSACLP00000008552	ENSACLP00000007986	Thromboxane A synthase 1 (platelet); Belongs to the cytochrome P450 family.	Protein kinase-like domain containing.	0.513
ENSACLP00000014404	LOC113031699	ENSACLP00000014404	ENSACLP00000007986	Mediator complex subunit 27.	Protein kinase-like domain containing.	0.513
ENSACLP00000035642	LOC113031699	ENSACLP00000035642	ENSACLP00000007986	Uncharacterized protein; Belongs to the cytochrome P450 family.	Protein kinase-like domain containing.	0.513
LOC113024447	LOC113031699	ENSACLP00000003351	ENSACLP00000007986	Cytochrome P450, family 3, subfamily A, polypeptide 65; Belongs to the cytochrome P450 family.	Protein kinase-like domain containing.	0.513
LOC113024448	LOC113031699	ENSACLP00000003410	ENSACLP00000007986	Cytochrome P450, family 3, subfamily A, polypeptide 65.	Protein kinase-like domain containing.	0.513
LOC113027103	LOC113031699	ENSACLP00000008126	ENSACLP00000007986	Thromboxane A synthase 1 (platelet); Belongs to the cytochrome P450 family.	Protein kinase-like domain containing.	0.513
LOC113027105	LOC113031699	ENSACLP00000008724	ENSACLP00000007986	Thromboxane A synthase 1 (platelet); Belongs to the cytochrome P450 family.	Protein kinase-like domain containing.	0.513
LOC113031699	ENSACLP00000003009	ENSACLP00000007986	ENSACLP00000003009	Protein kinase-like domain containing.	Cytochrome P450, family 3, subfamily A, polypeptide 65; Belongs to the cytochrome P450 family.	0.513
LOC113031699	ENSACLP00000008552	ENSACLP00000007986	ENSACLP00000008552	Protein kinase-like domain containing.	Thromboxane A synthase 1 (platelet); Belongs to the cytochrome P450 family.	0.513
LOC113031699	ENSACLP00000014404	ENSACLP00000007986	ENSACLP00000014404	Protein kinase-like domain containing.	Mediator complex subunit 27.	0.513
LOC113031699	ENSACLP00000035642	ENSACLP00000007986	ENSACLP00000035642	Protein kinase-like domain containing.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.513
LOC113031699	LOC113024447	ENSACLP00000007986	ENSACLP00000003351	Protein kinase-like domain containing.	Cytochrome P450, family 3, subfamily A, polypeptide 65; Belongs to the cytochrome P450 family.	0.513
LOC113031699	LOC113024448	ENSACLP00000007986	ENSACLP00000003410	Protein kinase-like domain containing.	Cytochrome P450, family 3, subfamily A, polypeptide 65.	0.513
LOC113031699	LOC113027103	ENSACLP00000007986	ENSACLP00000008126	Protein kinase-like domain containing.	Thromboxane A synthase 1 (platelet); Belongs to the cytochrome P450 family.	0.513
LOC113031699	LOC113027105	ENSACLP00000007986	ENSACLP00000008724	Protein kinase-like domain containing.	Thromboxane A synthase 1 (platelet); Belongs to the cytochrome P450 family.	0.513
LOC113031699	cbfa2t2	ENSACLP00000007986	ENSACLP00000029979	Protein kinase-like domain containing.	CBFA2/RUNX1 partner transcriptional co-repressor 2.	0.513
LOC113031699	runx1t1	ENSACLP00000007986	ENSACLP00000026421	Protein kinase-like domain containing.	RUNX1 partner transcriptional co-repressor 1.	0.513
cbfa2t2	LOC113031699	ENSACLP00000029979	ENSACLP00000007986	CBFA2/RUNX1 partner transcriptional co-repressor 2.	Protein kinase-like domain containing.	0.513
cbfa2t2	runx1t1	ENSACLP00000029979	ENSACLP00000026421	CBFA2/RUNX1 partner transcriptional co-repressor 2.	RUNX1 partner transcriptional co-repressor 1.	0.680