STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc18a2Solute carrier family 18 member 2. (516 aa)    
Predicted Functional Partners:
LOC113025649
Uncharacterized protein; Belongs to the synuclein family.
     
 0.907
LOC113035076
Solute carrier family 18 member 3a.
     
  0.866
slc32a1
Solute carrier family 32 member 1.
     
 0.857
LOC113014024
Aa_trans domain-containing protein.
     
 0.857
ENSACLP00000038471
Aa_trans domain-containing protein.
     
 0.857
LOC113020989
Solute carrier family 17 member 7b.
     
 0.786
slc17a6
Solute carrier family 17 member 6.
     
 0.786
ENSACLP00000018888
MFS domain-containing protein.
     
 0.786
SLC17A6
Solute carrier family 17 member 6b.
     
 0.786
LOC113026966
Solute carrier family 17 member 8.
     
 0.786
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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