Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ccdc71Si:dkeyp-87e7.4. (357 aa)    
Predicted Functional Partners:
chtop
Chromatin target of PRMT1a.
      
 0.634
TMEM158
Transmembrane protein 158 (gene/pseudogene).
      
 0.614
fam207a
Family with sequence similarity 207 member A.
   
  
 0.596
LOC113027513
Retinoblastoma binding protein 4, like.
    
   0.585
LOC113011815
Retinoblastoma binding protein 4.
    
   0.585
LOC113014472
WD_REPEATS_REGION domain-containing protein.
    
   0.585
FTSJ3
pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.
      
 0.566
exosc4
Exosome component 4.
   
  
 0.536
ENSACLP00000009847
Zinc finger and BTB domain containing 4.
  
 
 
 0.533
LOC113022260
Carbonic anhydrase XVI b.
      
 0.528
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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