STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113016583Uncharacterized protein. (218 aa)    
Predicted Functional Partners:
LOC113012080
RAB11 family interacting protein 5a (class I).
    
 0.977
ENSACLP00000004726
Uncharacterized protein.
   
 0.947
ENSACLP00000013802
C2 domain-containing protein.
   
 0.947
LOC113025765
Uncharacterized protein.
   
 0.947
rab11fip2
RAB11 family interacting protein 2 (class I).
   
 0.947
exoc2
Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.
    
 0.880
ENSACLP00000013797
FIP-RBD domain-containing protein.
   
 0.858
LOC113034294
RAB11a, member RAS oncogene family.
     
  0.856
LOC113031621
RAB11a, member RAS oncogene family, like.
     
  0.856
ENSACLP00000018134
RAB3A interacting protein (rabin3)-like 1.
    
 0.838
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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