STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113016583Uncharacterized protein. (218 aa)    
Predicted Functional Partners:
rab11fip2
RAB11 family interacting protein 2 (class I).
  
 0.937
LOC113012080
RAB11 family interacting protein 5a (class I).
    
 0.936
ENSACLP00000004726
Uncharacterized protein.
  
 0.933
ENSACLP00000013802
C2 domain-containing protein.
  
 0.933
LOC113025765
Uncharacterized protein.
  
 0.933
ENSACLP00000018134
RAB3A interacting protein (rabin3)-like 1.
    
 0.891
rab3ip
RAB3A interacting protein (rabin3).
    
 0.891
ENSACLP00000012866
Uncharacterized protein.
    
 0.885
ENSACLP00000012873
SH3 domain-containing protein.
    
 0.885
ENSACLP00000014175
Intersectin 2b.
    
 0.885
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.