vax1 protein (Astatotilapia calliptera) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

vax1

Ventral anterior homeobox 1. (322 aa)

Predicted Functional Partners:

LOC113023510

0.596

SRF

0.596

LOC113034698

0.526

ldb2

0.526

LOC113023769

0.526

tpk1

0.503

LHX3

0.438

lhx4

0.438

LOC113035083

0.429

gata5

0.413

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LHX3	LOC113023769	ENSACLP00000012651	ENSACLP00000028484	LIM homeobox 3.	LIM-domain binding 1b.	0.779
LHX3	LOC113034698	ENSACLP00000012651	ENSACLP00000011720	LIM homeobox 3.	LIM domain binding 1a.	0.779
LHX3	ldb2	ENSACLP00000012651	ENSACLP00000018470	LIM homeobox 3.	LIM domain binding 2a.	0.779
LHX3	vax1	ENSACLP00000012651	ENSACLP00000008030	LIM homeobox 3.	Ventral anterior homeobox 1.	0.438
LOC113023510	SRF	ENSACLP00000006169	ENSACLP00000033145	MADS-box domain-containing protein.	Serum response factor.	0.852
LOC113023510	gata5	ENSACLP00000006169	ENSACLP00000009828	MADS-box domain-containing protein.	GATA binding protein 5.	0.815
LOC113023510	vax1	ENSACLP00000006169	ENSACLP00000008030	MADS-box domain-containing protein.	Ventral anterior homeobox 1.	0.596
LOC113023769	LHX3	ENSACLP00000028484	ENSACLP00000012651	LIM-domain binding 1b.	LIM homeobox 3.	0.779
LOC113023769	gata5	ENSACLP00000028484	ENSACLP00000009828	LIM-domain binding 1b.	GATA binding protein 5.	0.660
LOC113023769	lhx4	ENSACLP00000028484	ENSACLP00000033223	LIM-domain binding 1b.	LIM homeobox 4.	0.779
LOC113023769	vax1	ENSACLP00000028484	ENSACLP00000008030	LIM-domain binding 1b.	Ventral anterior homeobox 1.	0.526
LOC113034698	LHX3	ENSACLP00000011720	ENSACLP00000012651	LIM domain binding 1a.	LIM homeobox 3.	0.779
LOC113034698	gata5	ENSACLP00000011720	ENSACLP00000009828	LIM domain binding 1a.	GATA binding protein 5.	0.660
LOC113034698	lhx4	ENSACLP00000011720	ENSACLP00000033223	LIM domain binding 1a.	LIM homeobox 4.	0.779
LOC113034698	vax1	ENSACLP00000011720	ENSACLP00000008030	LIM domain binding 1a.	Ventral anterior homeobox 1.	0.526
LOC113035083	vax1	ENSACLP00000018576	ENSACLP00000008030	Paired box 2a.	Ventral anterior homeobox 1.	0.429
SRF	LOC113023510	ENSACLP00000033145	ENSACLP00000006169	Serum response factor.	MADS-box domain-containing protein.	0.852
SRF	gata5	ENSACLP00000033145	ENSACLP00000009828	Serum response factor.	GATA binding protein 5.	0.815
SRF	vax1	ENSACLP00000033145	ENSACLP00000008030	Serum response factor.	Ventral anterior homeobox 1.	0.596
gata5	LOC113023510	ENSACLP00000009828	ENSACLP00000006169	GATA binding protein 5.	MADS-box domain-containing protein.	0.815