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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113007473Uncharacterized protein. (798 aa)    
Predicted Functional Partners:
LOC113033185
Si:dkey-3h3.3.
   
 
 0.921
dtx3
Zgc:66440.
   
 
 0.854
ifih1
Interferon induced with helicase C domain 1.
   
 
 0.628
ENSACLP00000007983
Poly [ADP-ribose] polymerase.
  
 
0.574
ifi35
Interferon-induced protein 35.
   
  
 0.540
ENSACLP00000000393
Histone deacetylase 12.
    
 0.536
hdac11
Histone deacetylase 11.
    
 0.536
parp3
Poly [ADP-ribose] polymerase.
    
 
 0.535
LOC113007472
Poly [ADP-ribose] polymerase.
  
 
0.531
aifm1
Apoptosis inducing factor mitochondrion associated 1.
  
 0.530
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.