STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113015519Uncharacterized protein. (794 aa)    
Predicted Functional Partners:
dnttip1
Ubiquitin-conjugating enzyme E2C.
    
 
 0.872
elmsan1
ELM2 and Myb/SANT-like domain containing 1b.
    
 
0.645
LOC113006533
ELM2 and Myb/SANT-like domain containing 1a.
    
 
0.645
ccdc51
Coiled-coil domain containing 51.
      
 0.474
pou2af1
Uncharacterized protein.
      
 0.470
map3k8
Mitogen-activated protein kinase kinase kinase 8.
      
 0.465
LOC113012227
Zinc finger and BTB domain containing 42.
    
 
 0.435
zbtb18
Zinc finger and BTB domain containing 18.
    
 
 0.435
LOC113015801
Rp1 like 1a.
  
     0.404
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.