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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113029775Cytochrome c heme lyase; Links covalently the heme group to the apoprotein of cytochrome c. (267 aa)    
Predicted Functional Partners:
LOC113028171
Protoheme IX farnesyltransferase, mitochondrial; Converts protoheme IX and farnesyl diphosphate to heme O. Belongs to the ubiA prenyltransferase family.
   
 
 0.955
fech
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
     
 0.884
ndufv2
NADH:ubiquinone oxidoreductase core subunit V2.
   
  
 0.815
LOC113022198
Cytochrome c-1.
   
 
 0.767
ndufa9
NADH:ubiquinone oxidoreductase subunit A9a.
   
 
 0.650
mrpl35
Mitochondrial ribosomal protein L35.
   
  
 0.640
ENSACLP00000004229
LisH domain-containing protein.
    
 
 0.634
LOC113007497
BC1 (ubiquinol-cytochrome c reductase) synthesis-like; Belongs to the AAA ATPase family.
   
  
 0.604
cpt2
Carnitine palmitoyltransferase 2; Belongs to the carnitine/choline acetyltransferase family.
    
   0.592
agk
Acylglycerol kinase.
    
 
 0.558
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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