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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113034395LRAT domain-containing protein. (246 aa)    
Predicted Functional Partners:
gak
Cyclin G associated kinase.
    
 0.922
grpel1
GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.
  
 0.898
CLPB
ClpB homolog, mitochondrial AAA ATPase chaperonin.
  
 
 0.861
dnajc10
DnaJ (Hsp40) homolog, subfamily C, member 10.
  
 0.858
ENSACLP00000002940
DnaJ (Hsp40) homolog, subfamily C, member 6.
    
 0.857
pnpla6
Patatin-like phospholipase domain containing 6.
   
 0.856
bag3
BCL2 associated athanogene 3.
   
 0.846
ENSACLP00000030483
Lecithin-cholesterol acyltransferase.
     
 0.831
LOC113024298
Cytochrome P450, family 2, subfamily U, polypeptide 1; Belongs to the cytochrome P450 family.
    
  0.831
alox5
Arachidonate 5-lipoxygenase a.
    
  0.828
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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