STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccnhCyclin H; Belongs to the cyclin family. (350 aa)    
Predicted Functional Partners:
ENSACLP00000029920
MNAT1 component of CDK activating kinase.
   
 0.999
gtf2h3
General transcription factor IIH, polypeptide 3.
   
 0.998
gtf2e1
General transcription factor IIE, polypeptide 1, alpha.
    
 0.996
gtf2e2
Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.
    
 0.996
cdk7
Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily.
    
 0.995
ercc2
Excision repair cross-complementation group 2.
    
 0.995
LOC113033395
General transcription factor IIH subunit.
   
 0.993
ENSACLP00000017663
General transcription factor IIH, polypeptide 1.
    
 0.992
ENSACLP00000019391
Cyclin-dependent kinase 20.
    
 0.991
ercc3
Excision repair cross-complementation group 3.
    
 0.991
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.