Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ccnhCyclin H; Belongs to the cyclin family. (350 aa)    
Predicted Functional Partners:
ENSACLP00000029920
MNAT1 component of CDK activating kinase.
   
 0.999
cdk7
Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily.
   
 0.997
gtf2h4
General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
   
 0.997
ercc3
Excision repair cross-complementation group 3.
    
 0.997
ENSACLP00000017663
General transcription factor IIH, polypeptide 1.
    
 0.996
ercc2
Excision repair cross-complementation group 2.
    
 0.996
ENSACLP00000019391
Cyclin-dependent kinase 20.
   
 0.994
LOC113033395
General transcription factor IIH subunit.
   
 0.990
gtf2h3
General transcription factor IIH, polypeptide 3.
   
 0.990
polr2a
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.985
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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