STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kdm8Lysine (K)-specific demethylase 8. (408 aa)    
Predicted Functional Partners:
rps6
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
    
   0.875
rccd1
RCC1 domain containing 1.
    
 
 0.809
ENSACLP00000030521
Uncharacterized protein.
    
 
 0.794
ENSACLP00000001986
Uncharacterized protein.
    
 0.668
NPAS3
Neuronal PAS domain protein 3.
    
 0.668
LOC113036918
Hypoxia inducible factor 1 subunit alpha, like.
    
 0.668
npas1
Neuronal PAS domain protein 1.
    
 0.668
hif1a
Hypoxia inducible factor 1 subunit alpha a.
    
 0.668
epas1
Endothelial PAS domain protein 1b.
    
 0.668
ccdc130
Coiled-coil domain containing 130.
    
   0.662
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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