LOC113015733 protein (Astatotilapia calliptera)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

LOC113015733

Si:ch211-129c21.1; Belongs to the semaphorin family. (808 aa)

Predicted Functional Partners:

LOC113033109

0.841

ENSACLP00000018204

0.841

LOC113013095

0.839

ENSACLP00000020066

0.839

ENSACLP00000020875

0.839

ENSACLP00000039184

0.839

ENSACLP00000039374

0.839

LOC113026494

0.839

LOC113010015

0.785

ENSACLP00000033147

0.785

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000018204	LOC113015733	ENSACLP00000018204	ENSACLP00000008202	Protein tyrosine phosphatase receptor type C.	Si:ch211-129c21.1; Belongs to the semaphorin family.	0.841
ENSACLP00000020066	ENSACLP00000020875	ENSACLP00000020066	ENSACLP00000020875	Sema domain-containing protein.	Plexin B3.	0.540
ENSACLP00000020066	ENSACLP00000039184	ENSACLP00000020066	ENSACLP00000039184	Sema domain-containing protein.	Plexin b1b.	0.540
ENSACLP00000020066	ENSACLP00000039374	ENSACLP00000020066	ENSACLP00000039374	Sema domain-containing protein.	Sema domain-containing protein.	0.545
ENSACLP00000020066	LOC113013095	ENSACLP00000020066	ENSACLP00000017209	Sema domain-containing protein.	Plexin b1a.	0.540
ENSACLP00000020066	LOC113015733	ENSACLP00000020066	ENSACLP00000008202	Sema domain-containing protein.	Si:ch211-129c21.1; Belongs to the semaphorin family.	0.839
ENSACLP00000020066	LOC113026494	ENSACLP00000020066	ENSACLP00000039914	Sema domain-containing protein.	Plexin b2b.	0.546
ENSACLP00000020875	ENSACLP00000020066	ENSACLP00000020875	ENSACLP00000020066	Plexin B3.	Sema domain-containing protein.	0.540
ENSACLP00000020875	ENSACLP00000039184	ENSACLP00000020875	ENSACLP00000039184	Plexin B3.	Plexin b1b.	0.551
ENSACLP00000020875	ENSACLP00000039374	ENSACLP00000020875	ENSACLP00000039374	Plexin B3.	Sema domain-containing protein.	0.540
ENSACLP00000020875	LOC113013095	ENSACLP00000020875	ENSACLP00000017209	Plexin B3.	Plexin b1a.	0.548
ENSACLP00000020875	LOC113015733	ENSACLP00000020875	ENSACLP00000008202	Plexin B3.	Si:ch211-129c21.1; Belongs to the semaphorin family.	0.839
ENSACLP00000020875	LOC113026494	ENSACLP00000020875	ENSACLP00000039914	Plexin B3.	Plexin b2b.	0.540
ENSACLP00000033147	LOC113015733	ENSACLP00000033147	ENSACLP00000008202	Homer scaffold protein 3b.	Si:ch211-129c21.1; Belongs to the semaphorin family.	0.785
ENSACLP00000033147	LOC113033109	ENSACLP00000033147	ENSACLP00000005652	Homer scaffold protein 3b.	Homer scaffold protein 1b.	0.987
ENSACLP00000039184	ENSACLP00000020066	ENSACLP00000039184	ENSACLP00000020066	Plexin b1b.	Sema domain-containing protein.	0.540
ENSACLP00000039184	ENSACLP00000020875	ENSACLP00000039184	ENSACLP00000020875	Plexin b1b.	Plexin B3.	0.551
ENSACLP00000039184	ENSACLP00000039374	ENSACLP00000039184	ENSACLP00000039374	Plexin b1b.	Sema domain-containing protein.	0.540
ENSACLP00000039184	LOC113013095	ENSACLP00000039184	ENSACLP00000017209	Plexin b1b.	Plexin b1a.	0.548
ENSACLP00000039184	LOC113015733	ENSACLP00000039184	ENSACLP00000008202	Plexin b1b.	Si:ch211-129c21.1; Belongs to the semaphorin family.	0.839