Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RELNReelin. (3460 aa)    
Predicted Functional Partners:
vldlr
Very low density lipoprotein receptor.
    
 0.981
LOC113008860
Low density lipoprotein receptor-related protein 8, apolipoprotein e receptor.
    
 0.973
ENSACLP00000007234
Uncharacterized protein.
    
 0.973
ENSACLP00000040253
Uncharacterized protein.
    
 0.973
ldlr
Low density lipoprotein receptor a.
    
 0.959
ENSACLP00000011608
Low density lipoprotein receptor b.
    
 0.959
ENSACLP00000012632
Low density lipoprotein receptor b.
    
 0.959
LOC113011259
Uncharacterized protein.
    
 0.959
LOC113028545
Integrin, alpha 3b; Belongs to the integrin alpha chain family.
    
 0.921
LOC113020103
Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.
    
 0.921
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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