STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUH41296.1Hypothetical protein. (199 aa)    
Predicted Functional Partners:
luxA_2
Alkanal monooxygenase alpha chain.
 
     0.950
cpo
Arylesterase.
 
     0.945
C1-hpah
P-hydroxyphenylacetate 3-hydroxylase, reductase component.
 
     0.893
betB_1
Betaine aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
     0.888
limB
Limonene 1,2-monooxygenase.
 
     0.784
CUH41301.1
Urea carboxylase-associated protein 1.
 
     0.690
gcvA_1
Gcv operon activator; Belongs to the LysR transcriptional regulatory family.
 
     0.646
CUH41293.1
Sarcosine oxidase, delta subunit family.
 
     0.471
CUH41291.1
Sarcosine oxidase, gamma subunit family.
 
     0.468
CUH43653.1
4-carboxymuconolactone decarboxylase.
 
     0.448
Your Current Organism:
Ruegeria atlantica
NCBI taxonomy Id: 81569
Other names: ATCC 700000, Agrobacterium atlanticum, Agrobacterium meteori, CECT 4292, CIP 105975, DSM 5823, IAM 14463, IFO 15792, JCM 21234, NBRC 15792, R. atlantica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.