STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUH41423.1Hypothetical protein. (404 aa)    
Predicted Functional Partners:
CUH41424.1
Epi-isozizaene 5-monooxygenase/(E)-beta-farnesene synthase; Belongs to the cytochrome P450 family.
 
  0.963
lgrD
Linear gramicidin synthase subunit D.
   
 0.875
CUH45203.1
Hypothetical protein.
  
 
   0.788
CUH45204.1
Hypothetical protein.
  
 
   0.788
CUH43004.1
Core-2/I-Branching enzyme.
  
 
   0.781
CUH44870.1
Capsule polysaccharide biosynthesis protein.
 
     0.778
CUH45205.1
Core-2/I-Branching enzyme.
  
     0.769
CUH42068.1
Hypothetical protein.
  
     0.765
CUH43003.1
Sulfotransferase family protein.
  
     0.765
CUH45206.1
Hypothetical protein.
  
     0.763
Your Current Organism:
Ruegeria atlantica
NCBI taxonomy Id: 81569
Other names: ATCC 700000, Agrobacterium atlanticum, Agrobacterium meteori, CECT 4292, CIP 105975, DSM 5823, IAM 14463, IFO 15792, JCM 21234, NBRC 15792, R. atlantica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.