STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUH41593.1Blue-light-activated protein. (469 aa)    
Predicted Functional Partners:
pleC_1
Non-motile and phage-resistance protein.
 
 0.999
barA_1
Signal transduction histidine-protein kinase BarA.
 
0.999
CUH44805.1
Aerobic respiration control sensor protein ArcB.
  
 0.999
barA_2
Signal transduction histidine-protein kinase BarA.
 
0.999
bfmBAB
2-oxoisovalerate dehydrogenase subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
    
 0.974
CUH44642.1
Blue-light-activated protein.
 
0.974
CUH41533.1
Hypothetical protein.
  
 0.972
CUH42760.1
Stage II sporulation protein E (SpoIIE).
  
 0.970
glnL
Nitrogen regulation protein NR(II).
 
0.958
kdpD
Sensor protein KdpD.
 
 0.956
Your Current Organism:
Ruegeria atlantica
NCBI taxonomy Id: 81569
Other names: ATCC 700000, Agrobacterium atlanticum, Agrobacterium meteori, CECT 4292, CIP 105975, DSM 5823, IAM 14463, IFO 15792, JCM 21234, NBRC 15792, R. atlantica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.