STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
potA_3Spermidine/putrescine import ATP-binding protein PotA; Belongs to the ABC transporter superfamily. (370 aa)    
Predicted Functional Partners:
potB_2
Spermidine/putrescine transport system permease protein PotB.
 
  0.974
ydcV_1
Inner membrane ABC transporter permease protein YdcV.
 
 
  0.972
potD_1
Spermidine/putrescine-binding periplasmic protein precursor.
 
 
  0.939
ydcV_6
Inner membrane ABC transporter permease protein YdcV.
 
 
  0.765
ydcV_3
Inner membrane ABC transporter permease protein YdcV.
 
  0.723
potB_5
Spermidine/putrescine transport system permease protein PotB.
 
  0.723
sugB_1
Trehalose transport system permease protein SugB.
 
 
  0.668
ydcV_2
Inner membrane ABC transporter permease protein YdcV.
 
 
  0.668
potH_2
Putrescine transport system permease protein PotH.
  
  0.668
CUH41307.1
ABC-type uncharacterized transport system, periplasmic component.
  
 
  0.664
Your Current Organism:
Ruegeria atlantica
NCBI taxonomy Id: 81569
Other names: ATCC 700000, Agrobacterium atlanticum, Agrobacterium meteori, CECT 4292, CIP 105975, DSM 5823, IAM 14463, IFO 15792, JCM 21234, NBRC 15792, R. atlantica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.