STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cuyAL-cysteate sulfo-lyase. (364 aa)    
Predicted Functional Partners:
patB
Cystathionine beta-lyase PatB.
    
  0.840
CUH42630.1
Glycine betaine transporter periplasmic subunit.
 
     0.761
yjiE
Quorum-sensing regulator protein D.
 
     0.702
aruH
Arginine--pyruvate transaminase AruH.
  
  
  0.671
xylF_1
2-hydroxymuconate semialdehyde hydrolase.
 
     0.615
opuAB_1
Glycine betaine transport system permease protein OpuAB.
 
     0.590
gbuA_1
Glycine betaine/carnitine transport ATP-binding protein GbuA.
 
     0.578
CUH41402.1
Indolepyruvate ferredoxin oxidoreductase.
     
 0.562
yjmC
Putative oxidoreductase YjmC.
  
  
  0.546
hpsN_2
Sulfopropanediol 3-dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
 
   
 0.508
Your Current Organism:
Ruegeria atlantica
NCBI taxonomy Id: 81569
Other names: ATCC 700000, Agrobacterium atlanticum, Agrobacterium meteori, CECT 4292, CIP 105975, DSM 5823, IAM 14463, IFO 15792, JCM 21234, NBRC 15792, R. atlantica
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