STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bedC1Benzene 1,2-dioxygenase subunit alpha. (362 aa)    
Predicted Functional Partners:
ybbH
Putative HTH-type transcriptional regulator YbbH.
 
     0.915
gcvT_8
Aminomethyltransferase; Belongs to the GcvT family.
 
 
  0.845
CUH41245.1
Bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2.
  
 
 0.771
paaE
1,2-phenylacetyl-CoA epoxidase, subunit E.
 
 
 0.771
CUH43645.1
L-Ala-D/L-Glu epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
     0.730
catB_2
Muconate cycloisomerase 1; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
     0.679
cprA
3-chloro-4-hydroxyphenylacetate reductive dehalogenase precursor.
  
 
 0.660
CUH43653.1
4-carboxymuconolactone decarboxylase.
 
   
 0.648
gcvT_2
Aminomethyltransferase; Belongs to the GcvT family.
 
 
 0.626
gcvT_11
Aminomethyltransferase; Belongs to the GcvT family.
 
 
 0.623
Your Current Organism:
Ruegeria atlantica
NCBI taxonomy Id: 81569
Other names: ATCC 700000, Agrobacterium atlanticum, Agrobacterium meteori, CECT 4292, CIP 105975, DSM 5823, IAM 14463, IFO 15792, JCM 21234, NBRC 15792, R. atlantica
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