STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lysDH_2Lysine 6-dehydrogenase. (380 aa)    
Predicted Functional Partners:
CUH43723.1
Alanine dehydrogenase.
 
  
  0.950
lgrD
Linear gramicidin synthase subunit D.
  
 
 0.818
CUH43724.1
PQ loop repeat.
       0.723
CUH43721.1
Alpha-ribazole phosphatase.
       0.692
gstB_2
Glutathione S-transferase GST-6.0.
       0.657
tycC_2
Tyrocidine synthase III.
  
 
 0.618
CUH41761.1
Hypothetical protein.
  
     0.584
argH1
Argininosuccinate lyase 1.
 
 
  
 0.544
CUH45684.1
Hypothetical protein.
  
     0.461
CUH44419.1
Hypothetical protein.
  
     0.458
Your Current Organism:
Ruegeria atlantica
NCBI taxonomy Id: 81569
Other names: ATCC 700000, Agrobacterium atlanticum, Agrobacterium meteori, CECT 4292, CIP 105975, DSM 5823, IAM 14463, IFO 15792, JCM 21234, NBRC 15792, R. atlantica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.