STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUH43976.1TRAP-type mannitol/chloroaromatic compound transport system, small permease component. (308 aa)    
Predicted Functional Partners:
siaT_12
Neu5Ac permease.
 
 
  0.994
siaP_5
Neu5Ac-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
    0.811
CUH44853.1
Hypothetical protein.
  
     0.770
degS
Signal transduction histidine-protein kinase/phosphatase DegS.
 
     0.735
nreC
Nitrogen regulation protein C.
 
     0.646
pstS_2
Phosphate-binding protein PstS precursor.
  
     0.526
CUH43802.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
     0.479
CUH43226.1
Sulfite exporter TauE/SafE.
  
     0.428
dctP_3
C4-dicarboxylate-binding periplasmic protein precursor.
  
    0.418
CUH45801.1
Hypothetical protein.
  
     0.405
Your Current Organism:
Ruegeria atlantica
NCBI taxonomy Id: 81569
Other names: ATCC 700000, Agrobacterium atlanticum, Agrobacterium meteori, CECT 4292, CIP 105975, DSM 5823, IAM 14463, IFO 15792, JCM 21234, NBRC 15792, R. atlantica
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