STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phbCPoly-beta-hydroxybutyrate polymerase. (600 aa)    
Predicted Functional Partners:
CUH44144.1
Polyhydroxyalkanoate depolymerase, intracellular.
 
  
 0.994
pta
Phosphate acetyltransferase.
 
 0.961
phaJ
(R)-specific enoyl-CoA hydratase.
 
  
 0.945
CUH44141.1
Polyhydroxyalkanoate synthesis repressor PhaR.
 
   
 0.901
fadJ
Fatty acid oxidation complex subunit alpha.
     
 0.895
fabG_5
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
  
 
 0.830
fabG_9
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
  
 
 0.828
CUH44142.1
Hypothetical protein.
 
   
 0.751
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
  
 0.703
fadB
Fatty acid oxidation complex subunit alpha.
     
 0.702
Your Current Organism:
Ruegeria atlantica
NCBI taxonomy Id: 81569
Other names: ATCC 700000, Agrobacterium atlanticum, Agrobacterium meteori, CECT 4292, CIP 105975, DSM 5823, IAM 14463, IFO 15792, JCM 21234, NBRC 15792, R. atlantica
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