STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cynR_2Cyn operon transcriptional activator; Belongs to the LysR transcriptional regulatory family. (300 aa)    
Predicted Functional Partners:
oxyR_3
Putative hydrogen peroxide-inducible genes activator; Belongs to the LysR transcriptional regulatory family.
  
     0.720
ugpB
Sn-glycerol-3-phosphate-binding periplasmic protein UgpB precursor.
 
     0.601
glpQ1
Putative glycerophosphoryl diester phosphodiesterase 1.
 
     0.578
idhA_2
Inositol 2-dehydrogenase.
       0.563
dmlR_2
D-malate degradation protein R.
  
     0.511
cynR_1
Cyn operon transcriptional activator; Belongs to the LysR transcriptional regulatory family.
  
     0.509
oxyR_1
Morphology and auto-aggregation control protein; Belongs to the LysR transcriptional regulatory family.
  
     0.503
ugpA
Sn-glycerol-3-phosphate transport system permease protein UgpA.
 
     0.495
lacG
Lactose transport system permease protein LacG; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.
 
     0.487
gltR_2
HTH-type transcriptional regulator GltR; Belongs to the LysR transcriptional regulatory family.
  
     0.459
Your Current Organism:
Ruegeria atlantica
NCBI taxonomy Id: 81569
Other names: ATCC 700000, Agrobacterium atlanticum, Agrobacterium meteori, CECT 4292, CIP 105975, DSM 5823, IAM 14463, IFO 15792, JCM 21234, NBRC 15792, R. atlantica
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